MIT Lab Revolutionizes Drug Discovery with AI-Driven Chemistry Models ShEPhERD and FlowER

May 20, 2026
MIT Lab Revolutionizes Drug Discovery with AI-Driven Chemistry Models ShEPhERD and FlowER
  • AI is advancing chemistry by understanding core principles, predicting feasible reaction pathways, and accelerating drug discovery through mechanism-aware, integrative modeling.

  • At MIT, he leads a lab that fuses AI with medicinal chemistry to design and synthesize molecules with desirable properties, using models that grasp reaction mechanisms and physical laws.

  • His career includes a postdoc at the Broad Institute focused on sifting billions of candidates to identify small molecules, followed by a MIT appointment in 2020 and ongoing work pairing chemistry challenges with computational methods.

  • Two flagship models—ShEPhERD and FlowER—are used to guide drug discovery and ground predictions in chemistry intuition, with FlowER honoring mass balance and reaction feasibility.

  • As an MIT associate professor, he develops and deploys AI-driven models to analyze, design, and predict outcomes for small-molecule drug candidates, speeding the discovery process.

  • His work sits at the intersection of chemical engineering and computer science, applying machine learning and cheminformatics to plan reaction pathways, automate synthesis, and identify new drug molecules.

  • Notable lab projects include ShEPhERD, which assesses 3D protein interactions of drug candidates, and FlowER, which predicts products while enforcing conservation principles to boost accuracy.

  • The research emphasizes anchoring AI in chemical intuition and reaction mechanisms to broaden AI’s role in chemistry, enhance experimental design, and improve automation and planning.

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Building AI models that understand chemical principles

MIT News | Massachusetts Institute of Technology • May 20, 2026

Building AI models that understand chemical principles

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